PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000451t2
Common NameTCM_000451
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family BES1
Protein Properties Length: 303aa    MW: 32326.2 Da    PI: 8.5768
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000451t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822187.84.4e-58112917149
            DUF822  17 rRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkssalaspves 109
                       rRERrRRaiaakiy+GLRaqGnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  +e ag+s+++s +ss+q s++ss+++spv+s
  Thecc1EG000451t2   1 RRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-LSELAGASTNISACSSIQPSPQSSSFPSPVPS 92 
                       8***********************************************************.9******************************* PP

            DUF822 110 ysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                       y+asp+ss  psp+++d +++   + llp+l++ ++++++
  Thecc1EG000451t2  93 YHASPSSSLCPSPTRFDANPS---TYLLPFLRNIAAIPNN 129
                       *******************88...5999999999888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.6E-551110IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
RRERRRRAIA AKIYTGLRAQ GNYKLPKHCD NNEVLKALCA EAGWIVEEDG TTYRKGCKPP  60
LSELAGASTN ISACSSIQPS PQSSSFPSPV PSYHASPSSS LCPSPTRFDA NPSTYLLPFL  120
RNIAAIPNNL PPLRISNSAP VTPPLSSPTS RGSKPKADWE SLSNGSLNSC RHPLFATSAP  180
SSPTRRHHKT PATIPECDES DASTVDSGRW VSFQTVASTA AAAVAAPPSP TFNLVKRVVQ  240
QNPLQDGVTG HGGVTWGTVT EIGRGSEFEF ENGRVKPWEG ERIHEIGVDD LELTLGTSKT  300
CA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3134710.0KF313471.1 Firmiana danxiaensis microsatellite a4587_SSR8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047017.10.0Brassinosteroid signaling positive regulator family protein isoform 1
RefseqXP_007047018.10.0Brassinosteroid signaling positive regulator family protein isoform 2, partial
SwissprotQ94A431e-118BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A061DFW60.0A0A061DFW6_THECC; Brassinosteroid signaling positive regulator family protein isoform 1
TrEMBLA0A061DFZ30.0A0A061DFZ3_THECC; Brassinosteroid signaling positive regulator family protein isoform 2 (Fragment)
STRINGPOPTR_0007s12370.11e-153(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.24e-95BES1 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]